rs32040500 SNP Detail

Summary

• ID
  rs32040500
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30252485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTGCCAGCC TGGCGGAGAT GGATTAAGAG GACTGAGAAC
  TCTTTGGGGG ACTAATCGGG ACCCAGGGTC CCAACTGCCA CAATGATTGC CACACCTATA
  W
  GGGTCTGCCT CCTAGACTTT TAGCTTCCCC TTACAGAAAT GGAAAAAGGC TTAATGACAT
  TTCCCTGGTG TCCTTTTCCG GGCATCCAGC AGGCGTTTA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46097861	mCV25394922	ABI	CRAMUS_MOUSE	f	SNP	A					A		T
ss60990790	NES16136655	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	A		T	T	A	A		T	A	T	A		T
ss148682298	ENSMUSSNP6552317	ENSEMBL	ENSEMBL_Sanger	f	SNP	A							T
ss322135210	CHEV_7_31338079	CHEVERUD	SCREENING_POP	f	SNP											A					T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32040500					SNP	A	A	A	T	A	A	T	T	A	A	A	T	A	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60990790	NES16136655	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30252485 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18808	CpG island 18808	409 bp distal
Cpgi18809	CpG island 18809	131 bp proximal
Cpgi18810	CpG island 18810	1166 bp proximal
Hspb6	heat shock protein, alpha-crystallin-related, B6	within coordinates
Mir9769	microRNA 9769	156 bp downstream
Proser3	proline and serine rich 3	761 bp upstream
Rr400242	regulatory region 400242	568 bp downstream
Tssr65779	transcription start site region 65779	496 bp downstream
Tssr65780	transcription start site region 65780	203 bp upstream
Tssr65781	transcription start site region 65781	233 bp upstream
Tssr65782	transcription start site region 65782	1712 bp upstream
Tssr65783	transcription start site region 65783	1787 bp upstream
Tssr65784	transcription start site region 65784	1811 bp upstream
Tssr65785	transcription start site region 65785	1863 bp upstream
Tssr65786	transcription start site region 65786	1881 bp upstream
Tssr65787	transcription start site region 65787	1975 bp upstream
Tssr71787	transcription start site region 71787	744 bp upstream
Tssr71788	transcription start site region 71788	685 bp upstream
Tssr71789	transcription start site region 71789	1605 bp downstream
Tssr71790	transcription start site region 71790	1717 bp downstream