rs32040714 SNP Detail

Summary

• ID
  rs32040714
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110229848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTTAATG AAAGAGGAAA
  GAAAGGGGGG GAAAAAGCAG TTTGCAGATG CCAACTGGGC TCCCCTCCCT TCGTCTTCTC
  CCCCCTTCCC CGACCTGCAC GCGGGCTTGC TGTGCAGGGG CAGTGACTCA GCGCCCACAC
  GCTGCGCGGC GAGCAGCTGC TGGCCGGAGG CGGGCGGATG GACGTGCAGC CGGAACCGTG
  Y
  GCCTCCGAGG GCCTGAGACC TTCATTGTTC GTCTCCCCTT CCAGTTCTCC TCTTCCTTCC
  TCTTTCCCAA GCCTTTTTTC ATGCTGCCTT CACTTCTATC TAGCCTTCTC TCCCTCTTTC
  CTTCCTCCGT GCTTTCAGTC ACCTCTGTAT CCAGTGAGGA ATGCTAGCCT CTAAGCTTGA
  AGGCCCAGGG CACAGGGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46098306	mCV23101140	ABI	CRAMUS_MOUSE	f	SNP		T					C	C
ss50455951	NES14118603	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	C	C	C		C	C	C		C	C	C	C		C
ss145645195	ENSMUSSNP5747324	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
ss322397537	CHEV_7_117774155	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32040714					SNP	C	T	T	C	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50455951	NES14118603	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110229848 () rs orientation: forward

Symbol	Name	Function Class
Adm	adrenomedullin	821 bp downstream
Cpgi19577	CpG island 19577	1369 bp distal
Cpgi19578	CpG island 19578	within coordinates
Gm28863	predicted gene 28863	within coordinates
Gm72687	predicted gene, 72687	419 bp upstream
Rr400547	regulatory region 400547	133 bp downstream
Rr653271	regulatory region 653271	430 bp distal
Rr653272	regulatory region 653272	within coordinates
Rr653273	regulatory region 653273	275 bp distal
Rr653274	regulatory region 653274	1072 bp proximal
Tssr68502	transcription start site region 68502	1110 bp downstream