rs32042111 SNP Detail

Summary

• ID
  rs32042111
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:39298418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTATACCT AAACTATATA
  GTTAGCATTA AAGAATTTGA TCATGAAGTG TTCCTTTCAT TCAGTTTTTG CAGGGTCCAT
  GTTTCACAAA GCATTTAGAA AAATGGACAT ATCTTTTCAG ATTTTTAAAT CTTTAAATTT
  CACCTATATA TTCTGTCATT CCTAAAATGA CAGTTACTAA ATGCAAAAGG AAGGTGGTTG
  R
  CTTTTAATGT GGTTCAGTAT ATATTTATTT ATAACATGGC TGTTTTTAAA TGATCTTTAC
  CATAAGAATT TTTACCGGAA TAAATAGCTA TTGCTAAGTT GTAGTAATAT AAAATTCAAA
  TGTATAGAAT AACTCTCAGT GTCAATGAGA TTCCTAAAGT TTCATATGTC ATTAGTTAAG
  AGGTAAAAAT ATACAAATAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39355017	mCV23520276	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss147663857	ENSMUSSNP6430458	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32042111					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:39298418 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rims2	regulating synaptic membrane exocytosis 2			Intron
				Noncoding-Transcript-Variant
Tssr131153	transcription start site region 131153			716 bp downstream
Tssr131154	transcription start site region 131154			688 bp downstream
Tssr131155	transcription start site region 131155			665 bp downstream
Tssr131156	transcription start site region 131156			442 bp downstream