rs32042418 SNP Detail

Summary

• ID
  rs32042418
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28855565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCG AATCTTTTAC CCCAGTGTCA
  K
  AAGGTCACCC GCTACCATGG CCCCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46098219	mCV23832889	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	G
ss148642738	ENSMUSSNP1049374	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32042418					SNP	T	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28855565 () rs orientation: forward

Symbol	Name	Function Class
1110035H17Rik	RIKEN cDNA 1110035H17 gene	within coordinates
Cpgi18740	CpG island 18740	within coordinates
Fam98c	family with sequence similarity 98, member C	within coordinates
Gm73440	predicted gene, 73440	313 bp downstream
Rr400219	regulatory region 400219	within coordinates
Rr644490	regulatory region 644490	1912 bp distal
Rr644491	regulatory region 644491	72 bp distal
Rr644492	regulatory region 644492	417 bp distal
Rr644493	regulatory region 644493	33 bp proximal
Rr644494	regulatory region 644494	56 bp proximal
Rr644495	regulatory region 644495	181 bp proximal
Rr644496	regulatory region 644496	1170 bp proximal
Tssr65599	transcription start site region 65599	472 bp downstream
Tssr65600	transcription start site region 65600	449 bp downstream
Tssr65601	transcription start site region 65601	386 bp downstream
Tssr71610	transcription start site region 71610	524 bp upstream
Tssr71611	transcription start site region 71611	509 bp upstream
Tssr71612	transcription start site region 71612	410 bp upstream
Tssr71613	transcription start site region 71613	184 bp upstream
Tssr71614	transcription start site region 71614	145 bp upstream
Tssr71615	transcription start site region 71615	32 bp downstream