rs32044161 SNP Detail

Summary

• ID
  rs32044161
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:43058461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATGGCTT AACCGTTCCC
  CACTTTATGG CTACTGGTTC AAAGGCATCA GAAAACCATC ACTTTCATTT CCAGTGGCCA
  CAAATAACAA AGATAAAGTG TTAGAATGGG AAGCCCGAGG GCGCTTCCAG CTCTTGGGGG
  ATATCTCTAA AAAGAACTGT TCCTTGCTAA TCAAAGATGT TCAGTGGGGA GACTCAACAA
  R
  CTATTTCTTC CGGATGGAGA GAGGATTTGA GAGATTCAGT TTCAAGGAGG AGTTCAGGCT
  ACAAGTGGAA GGTAAGAGTT GTAGACATAG CAGGGAACCT TGGTCTCTCA CTGGGGGAGG
  GACAGTGGAA GATAAACTGT GATGCAAAGA AGACTACTTC TGGGAGGAGC CGCTGGAGTC
  ACAGGATTGG TATCCTCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss46098355	mCV22794622	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss149071755	ENSMUSSNP3390843	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs32044161					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43058461 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr645953	regulatory region 645953			823 bp distal
Rr645954	regulatory region 645954			463 bp distal
Siglecg	sialic acid binding Ig-like lectin G			Coding-NonSynonymous
				Noncoding-Transcript-Variant
Tssr65984	transcription start site region 65984			826 bp downstream
Tssr65985	transcription start site region 65985			817 bp downstream
Tssr65986	transcription start site region 65986			781 bp downstream
Tssr65987	transcription start site region 65987			764 bp downstream
Tssr65988	transcription start site region 65988			752 bp downstream
Tssr65989	transcription start site region 65989			519 bp downstream
Tssr65990	transcription start site region 65990			498 bp downstream
Tssr65991	transcription start site region 65991			215 bp upstream
Tssr65992	transcription start site region 65992			226 bp upstream
Tssr65993	transcription start site region 65993			259 bp upstream
Tssr65994	transcription start site region 65994			372 bp upstream