rs32044205 SNP Detail

Summary

• ID
  rs32044205
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45158456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCTTCCT TCCCTCCCTT
  TCTCTGAGTA TCACCCCAAA TCGTACGCAT GCTTATCCCA ACCCCCAGGA CGCTCTCAAT
  TCCGCAGAAC CCCATCTGGA TACATAGCTG CTTAACGACC CATAGTGCTC AACGTCTCTA
  CTTTTCCCAT GTCTCAAACA GCCTGGTTTT CTCTTCCATC TCCCTCCTGG AACCTGCAAA
  R
  ACTTACAACT TGTCTGCTCT ATTATTTTCC TCTGATACAA TGGTTTTCAG GCTTCAAGAT
  TTCACAGAGT TGAGTACTAA CGCCTGGCAG GAGGCCTCGC TACACAGGAG CTGGGAACAA
  CCTGTCTCAG GAGGTAACAA CAGCTTGTAT TGCTAGGGAG AGCTACAGGA AGAACCAGGC
  CATAAATCAG GGACCTGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46098638	mCV22698103	ABI	CRAMUS_MOUSE	f	SNP		G	A					A		A
ss61003343	NES16128350	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		G	A	A	A	G	A	G	G	A
ss149136048	ENSMUSSNP2978325	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32044205					SNP	A	G	A	A	A	A	A	A	G	A	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61003343	NES16128350	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45158456 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19064	CpG island 19064	638 bp proximal
Nucb1	nucleobindin 1	within coordinates
Rr400313	regulatory region 400313	1249 bp upstream
Rr646471	regulatory region 646471	1074 bp distal
Rr646472	regulatory region 646472	within coordinates
Rr646473	regulatory region 646473	1284 bp proximal
Tssr72423	transcription start site region 72423	1319 bp downstream
Tssr72424	transcription start site region 72424	1334 bp downstream
Tssr72425	transcription start site region 72425	1368 bp downstream
Tulp2	TUB like protein 2	within coordinates