rs32044665 SNP Detail

Summary

• ID
  rs32044665
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45571563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TCACTTACTT GGGCCTCAGT TTGCTAATCT ATATAGTGGG TATAATACAC AGTCAATAAA
  GAAAATAGAC GGATGGCAAT AATGACTAGG TGGGCAGATG CTAATTTAAA AAGGATAATC
  CTGGAAAGCT TCTTGGAGGA GGTGCTATTT GACCTGAGTC ATTTGGATAC TAGGGAGAAA
  ATGTCCCAAG CTTTGAGAAG AAACGCTGGC CGTTTGGAGA GCAGACAGAA TGGCCAGTGT
  GTCTGGAGCA CAGAGAGCGT AGGGTGTGGT GAGCGGGACA GCAGAGGATT CACTTGGAAA
  K
  TCATGGAGGA ATCAGGATTT TACTGTAAGT GCTGTGGGAG GCCATTAGAA TTCTCACAGC
  ACTCTAGTCC CAGGGTTATA GTGTGAACTA TCATTTATTC TCAGAGTTAG GGGCTGTGGG
  TGATGAACTA GGACTGATGA AGTTAGGGCT GGGGATCTGG ATGATGGTGC TAGAGCTGGG
  TGTGATGACC TAAGCCTGCA GGGGTGAGTG ACCAGCTGGC TTGGGGATTG CGAGACTGGG
  AGCTGGGTAC CACACAGCAC AGCCTCTGCA GCATCCATTG GCAGTGTGAC CATAGGCGTT
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46098070	mCV23847874	ABI	CRAMUS_MOUSE	f	SNP	T	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs32044665					SNP	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45571563 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19109	CpG island 19109	827 bp proximal
Cpgi19110	CpG island 19110	1827 bp proximal
Emp3	epithelial membrane protein 3	735 bp upstream
Gm45442	predicted gene 45442	1 bp downstream
Odad1	outer dynein arm docking complex subunit 1	1933 bp upstream
Rr368318	regulatory region 368318	617 bp upstream
Rr368319	regulatory region 368319	837 bp upstream
Rr400324	regulatory region 400324	497 bp downstream
Rr400325	regulatory region 400325	1218 bp upstream
Rr646609	regulatory region 646609	268 bp distal
Rr646610	regulatory region 646610	within coordinates
Rr646611	regulatory region 646611	1043 bp proximal
Tssr2257	transcription start site region 2257	701 bp downstream
Tssr2258	transcription start site region 2258	1970 bp downstream
Tssr66661	transcription start site region 66661	1062 bp upstream
Tssr66662	transcription start site region 66662	1395 bp upstream
Tssr72490	transcription start site region 72490	1946 bp upstream
Tssr72491	transcription start site region 72491	1718 bp upstream
Tssr72492	transcription start site region 72492	1503 bp upstream
Tssr72493	transcription start site region 72493	1471 bp upstream
Tssr72494	transcription start site region 72494	1461 bp upstream
Tssr72495	transcription start site region 72495	1445 bp upstream
Tssr72496	transcription start site region 72496	1359 bp upstream
Tssr72497	transcription start site region 72497	1256 bp upstream
Tssr72498	transcription start site region 72498	1012 bp upstream
Tssr72499	transcription start site region 72499	827 bp upstream
Tssr72500	transcription start site region 72500	692 bp upstream
Tssr72501	transcription start site region 72501	1049 bp downstream
Tssr72502	transcription start site region 72502	1280 bp downstream