rs32046648 SNP Detail

Summary

• ID
  rs32046648
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:164034150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTTGAATTG TGTATGGGGT AACTTGTAAC AGTACAGATA
  AATAAAAATT CCTTTTTAGG GGAGCTGATA GATTTTTTTT AATGTCTAAG TTATTTATTT
  K
  TAGCATTTTT TTCTTATTTG TCTGCTTGAT GGTTTATTTG CTCAAAATAG TCTCCTGTAT
  CCCCATACAG TAACAGATGG CTTTGAACTC CTGATCCTT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45100312	mCV23038359	ABI	CRAMUS_MOUSE	f	SNP		G	G					G		T
ss60338280	NES15832846	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		T	T	G	G	T	G	G	T	G
ss145974589	ENSMUSSNP1162247	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32046648					SNP	G	G	G	G	G	G	G	G	T	T	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60338280	NES15832846	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164034150 () rs orientation: forward

Symbol	Name	Function Class
F5	coagulation factor V	Intron
Rr422161	regulatory region 422161	1911 bp proximal