rs32049399 SNP Detail

Summary

• ID
  rs32049399
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148886822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAGGGGT TGAGCCTAAT
  ACTAGGAATG GAGGTGGGTC TGATAATGAT GTAGAAAGAA ATCTGTCACC ATCCCCTTCC
  TGGCCAGGCC TTGTTCATTG TCTAATTCAG TTCTGTCTCC CACTGTGGAG TGTTGGGCTT
  AGAAAATACA TACTCAGTGA ATGAATGAGC AAAGGATTAC TCCAAATAAA CATAACAAAA
  S
  GAAACTAGAC AGAGGACAAG AAGGGATGGG GAGAGGACTT GAAGGAAGGA GGGGTACTGG
  ATGTCCCCAG GAACAAGGAC AGTTACTGGC ACTTACAGAT CAATATCTTG GCCCAAGCCC
  TTTTCCTGCA TTAACCTACG TTAGTCTTGC AACGCTCCCA GACAGCAATA CTGTTATCAG
  CCCCATTTCT CTGTTGGGAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45600974	mCV24951916	ABI	CRAMUS_MOUSE	f	SNP	C	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs32049399					SNP	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148886822 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15311	CpG island 15311	1478 bp proximal
Rr100549	regulatory region 100549	1378 bp proximal
Rr407230	regulatory region 407230	1361 bp proximal
Tssr1379	transcription start site region 1379	1965 bp upstream
Tssr40301	transcription start site region 40301	1985 bp upstream