rs32050400 SNP Detail

Summary

• ID
  rs32050400
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180106991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAT TCTGGTATAC GATACTGTGC
  Y
  TAGGTATAGC GCTTAATAGT TTAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45100559	mCV23631387	ABI	CRAMUS_MOUSE	f	SNP	T	T	C		T	C
ss46715761	NES10668299	PERLEGEN	MM_PANEL2	f	SNP	T			C		C	C	C	C	C	C	C
ss146379317	ENSMUSSNP5505440	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32050400					SNP	T	T	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46715761	NES10668299	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180106991 () rs orientation: forward

Symbol	Name	Function Class
Gm70819	predicted gene, 70819	942 bp downstream
Rr367068	regulatory region 367068	315 bp upstream
Rr424444	regulatory region 424444	1448 bp distal
Rr424445	regulatory region 424445	within coordinates