rs32051534 SNP Detail

Summary

• ID
  rs32051534
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:94762129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATGGGTA ACCCCCTCAG
  GTGAACTCAA GTTCACAGCA CAACAATTTT ACTTCTCAAC ACTGCATTTA CACAGGAAGC
  AAAAGTTACG TGCTCAACCT GCAAAACCGC CTGCTCAAAG TACATGGATT TCAACAACTC
  TCCCCAGTGG CTGCTGTCAA CAGACACAGT AATCAAGGAG AGTTTAGAGA AGACCTATGG
  Y
  GAAGTCATGC TTCCAATTTT TCACTTTTTT GAGGTGCTGG CGATAGAATC CAGGGCATTC
  CACACACGAG GCAAGCCCAC TACCAGTTAG CAAACAACTC CTGTGCTCCT CCACTCTTTT
  TAAAGGAGCA CTCGCCTCTC CCATTTTATG GGAATCTTAT AAGCACTTAA GTGACAGAAA
  ATTAAAGTGC TACTGTGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47620334	NES11418020	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32051534					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47620334	NES11418020	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:94762129 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20835	CpG island 20835	1088 bp proximal
Nudt21	nudix hydrolase 21	within coordinates
Ogfod1	2-oxoglutarate and iron-dependent oxygenase domain containing 1	1697 bp upstream
Rr368582	regulatory region 368582	1482 bp upstream
Rr667878	regulatory region 667878	within coordinates
Rr667879	regulatory region 667879	1495 bp proximal
Tssr78816	transcription start site region 78816	1720 bp upstream
Tssr82477	transcription start site region 82477	1506 bp downstream
Tssr82478	transcription start site region 82478	1534 bp downstream