rs32051540 SNP Detail

Summary

• ID
  rs32051540
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:94762828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTAAACAA ATAACCAGTC
  TAAACTGGAC ACTTTTTTCC CATTAGAATC AGCTCCACAC TAGGGAATGA GGTACCAAAC
  ATTATAAGCT ATATCCCAAT CTCAATTTCT TGCCACAACA AAATTTTGTT TGAGTGATCC
  CGAAATGCAA TCATCTGCTT AAGACAAAGG TTTGTTGAAA ACAAAACAGC CTGCAAACAG
  R
  CTGTCGGGAC AACATGTAAG GTACCTCCGA CCTCTGAAAG TACAACCAGA CAACAGAGTG
  TGTCCTCGCA ATTTTAGGTC TACTGGGAGT CTGCAATGAT ACTGTATGTT GGCACTTTGG
  TAGACAAGAC ATACAAATGC AAAAAGGTAG ACCAAACAGC GCGAAAATTA ATAAAATGTG
  GCCACTGGAT GGAACACTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47620340	NES11417983	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32051540					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47620340	NES11417983	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:94762828 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20835	CpG island 20835	389 bp proximal
Nudt21	nudix hydrolase 21	within coordinates
Ogfod1	2-oxoglutarate and iron-dependent oxygenase domain containing 1	998 bp upstream
Rr368582	regulatory region 368582	783 bp upstream
Tssr78816	transcription start site region 78816	1021 bp upstream
Tssr82477	transcription start site region 82477	807 bp downstream
Tssr82478	transcription start site region 82478	835 bp downstream