rs32053490 SNP Detail

Summary

• ID
  rs32053490
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:34100898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTAATAT ATTTCTCCCC
  TGCCTCCACC TTCATAATGC TGGGATTACA AGTGCATACC ACCACATGTA GTTGTTTTCT
  AGATCTTTGT TTTGATATAG AAGCAATCAG TGCCTCATTG GTAACTAGTT TCTAGTAGAG
  ATCATACAGG GCTATTAGCC AGGCACTGTG TTAAATAATT ACTGGATAGA GAAATAATAA
  Y
  AGGTTTTTAT ATTTGTCTGT TTATCTGTTT GGGTTTGTTT TGTTTGTTTC TTTGTTTTTT
  GTTTGTTTGG TTTTGTTTTT TAAGATAGGG TTTCTTTGCA TAGCCCTGGC TATCCTGAAA
  CTTAATCTGT AGACCAGGTT GGCCTTGAAT TCAAAAGATA GACCTATCTC TGCCTCCTAA
  GAGCTACATA TTTTTACCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39356711	mCV23549111	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss147537800	ENSMUSSNP1694020	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32053490					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:34100898 () rs orientation: forward

Symbol	Name	Function Class
Mtdh	metadherin	within coordinates
Tssr131017	transcription start site region 131017	1221 bp downstream
Tssr133963	transcription start site region 133963	1219 bp upstream