rs32053515 SNP Detail

Summary

• ID
  rs32053515
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:94763757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGCCCGG GGAGACGTCC
  GCGGGGCGGG CAGCGGTTAT CTGCGTCCCG CTCAGCAGCC ACCACCCGCC ATTAACAGTC
  GAGAGCAAGA GGCGCGGAAC ACACGCCGGA AGTGAATACG CTCCGGAGGC AGGAAGTTGG
  GAGGCAGGCC ACTGCGACCA TTTGACCAAT TGCTGGCGGC GTGACGCAAT ATGTTGATCT
  Y
  CCATTGGTTA TTTTTGTGGA GATCCCGCCT CCCTGTGCTT TACTGCCTTT CCATTGGGTA
  ATGCTGGTGA AATAAGGAAA GAGGGTTTTC GGGAACTGTA GTTTCTGGAG GGAAGTAGCG
  TCCTGACTTC CTTGGCGTGG GTCTGTGCAC CGTGAGAAGA TGAACGGGAA GCGGCCGGCG
  GATCCTGGCC CAGCGCGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47620358	NES11417989	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32053515					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47620358	NES11417989	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:94763757 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20835	CpG island 20835	within coordinates
Nudt21	nudix hydrolase 21	90 bp upstream
Ogfod1	2-oxoglutarate and iron-dependent oxygenase domain containing 1	69 bp upstream
Rr368582	regulatory region 368582	within coordinates
Rr667878	regulatory region 667878	1594 bp distal
Rr667879	regulatory region 667879	within coordinates
Rr667880	regulatory region 667880	1466 bp proximal
Tssr78816	transcription start site region 78816	92 bp upstream
Tssr82477	transcription start site region 82477	102 bp upstream
Tssr82478	transcription start site region 82478	83 bp upstream