rs32054373 SNP Detail

Summary

• ID
  rs32054373
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:94764167 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAAGAAG CAGGTATCGG
  CAGAGTTTTC GGACGCTGTC ACTGAAGAAA TCCTGAGGAA GCAGGTGGCT GAGGCCTGGA
  GCTGCCGGAC ACCGTTCAGC CATGGTAATG GGGTGCTGTA GGGAGGCGCG GCAGCAAGAG
  GTGTGGGGAG GATCGCAGCC ACCTCCGACC CGGGCGCTGA CTGCTGCTCG GTTCATTCCA
  K
  ATTCTGCTTG ATTTGGCAAG CCTGGGGAGG AAAATAAATA TAAGCTCCGG ACACTATGGG
  GAAGTGGGAG ACATGTAGCC TGGGGGTTGA ATTCTAGAAT CAGAGGTCAC TCAGAATCCC
  TCTGCTGATT GTACGTCATT GGGCAATGCA TATAACTTTG CTTAAGGGCC AGTTTCTTCG
  TTTATAAAAC GGAATCGTTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47620376	NES11417995	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32054373					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47620376	NES11417995	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:94764167 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20835	CpG island 20835	within coordinates
Nudt21	nudix hydrolase 21	500 bp upstream
Ogfod1	2-oxoglutarate and iron-dependent oxygenase domain containing 1	within coordinates
Rr368582	regulatory region 368582	188 bp downstream
Tssr78816	transcription start site region 78816	251 bp downstream
Tssr82477	transcription start site region 82477	512 bp upstream
Tssr82478	transcription start site region 82478	493 bp upstream