rs32054442 SNP Detail

Summary

• ID
  rs32054442
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156046534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCTT CCCTGGAGGT GTGGGTATGA
  R
  AGATGCCACA GAAAGTTGAC AGTTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss45601655	mCV22553942	ABI	CRAMUS_MOUSE	f	SNP		G	G			A	G
ss46785708	NES10990699	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G		G		A	G	A	A
ss148122619	ENSMUSSNP4313781	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G				G
ss321444093	CHEV_4_155336186	CHEVERUD	SCREENING_POP	f	SNP								A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs32054442					SNP	G	G	G	G	G	A	G	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46785708	NES10990699	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156046534 () rs orientation: forward

Symbol	Name	Function Class
C1qtnf12	C1q and tumor necrosis factor related 12	241 bp upstream
Cpgi15495	CpG island 15495	227 bp proximal
Gm42365	predicted gene, 42365	667 bp upstream
Gm68249	predicted gene, 68249	within coordinates
Rr606619	regulatory region 606619	within coordinates
Rr606620	regulatory region 606620	1036 bp proximal
Rr606621	regulatory region 606621	1344 bp proximal
Tssr40744	transcription start site region 40744	215 bp upstream
Tssr40745	transcription start site region 40745	265 bp upstream
Tssr40746	transcription start site region 40746	334 bp upstream
Tssr40747	transcription start site region 40747	464 bp upstream