rs32054858 SNP Detail

Summary

• ID
  rs32054858
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43210944 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GGGAA TAAATCCATA GGCCAAAGTC
  R
  AATATCTGAA CAAAATGAAC GATTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46099075	mCV25343370	ABI	CRAMUS_MOUSE	f	SNP	G	A						G		A
ss61002045	NES16129048	PERLEGEN	MM_PANEL2	r	SNP	C		C	C	C	C	C		T	T	C	C	T	C	T	T	C
ss149076641	ENSMUSSNP1024413	ENSEMBL	ENSEMBL_Sanger	r	SNP		T	C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32054858					SNP	G	A	G	G	G	G	G	G	A	A	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61002045	NES16129048	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43210944 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi18937	CpG island 18937	604 bp proximal
Gm44818	predicted gene 44818	within coordinates
Rr645990	regulatory region 645990	356 bp proximal
Rr645991	regulatory region 645991	747 bp proximal
Tssr66014	transcription start site region 66014	739 bp upstream
Tssr66015	transcription start site region 66015	771 bp upstream
Tssr66016	transcription start site region 66016	808 bp upstream
Zfp175	zinc finger protein 175	736 bp upstream