rs32055216 SNP Detail

Summary

• ID
  rs32055216
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:94764221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGAAGCAG GTGGCTGAGG
  CCTGGAGCTG CCGGACACCG TTCAGCCATG GTAATGGGGT GCTGTAGGGA GGCGCGGCAG
  CAAGAGGTGT GGGGAGGATC GCAGCCACCT CCGACCCGGG CGCTGACTGC TGCTCGGTTC
  ATTCCATATT CTGCTTGATT TGGCAAGCCT GGGGAGGAAA ATAAATATAA GCTCCGGACA
  Y
  TATGGGGAAG TGGGAGACAT GTAGCCTGGG GGTTGAATTC TAGAATCAGA GGTCACTCAG
  AATCCCTCTG CTGATTGTAC GTCATTGGGC AATGCATATA ACTTTGCTTA AGGGCCAGTT
  TCTTCGTTTA TAAAACGGAA TCGTTAATAG TATTCCCCCT CCGAAAGATG GGATTGACAA
  ACTAATGTTT GTAGACATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47620379	NES11417996	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32055216					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47620379	NES11417996	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:94764221 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20835	CpG island 20835	within coordinates
Nudt21	nudix hydrolase 21	554 bp upstream
Ogfod1	2-oxoglutarate and iron-dependent oxygenase domain containing 1	within coordinates
Rr368582	regulatory region 368582	242 bp downstream
Rr667879	regulatory region 667879	292 bp distal
Rr667880	regulatory region 667880	1002 bp proximal
Tssr78816	transcription start site region 78816	305 bp downstream
Tssr82477	transcription start site region 82477	566 bp upstream
Tssr82478	transcription start site region 82478	547 bp upstream