rs32055604 SNP Detail

Summary

• ID
  rs32055604
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140426819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATAA GGTGAACAGC AGCCTACATG
  Y
  TCGCCTTTTC GTGTGTGCGC CCGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45601954	mCV23725051	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	C
ss147709696	ENSMUSSNP2823283	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32055604					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140426819 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15194	CpG island 15194	5 bp proximal
Cpgi15195	CpG island 15195	1557 bp proximal
Gm69527	predicted gene, 69527	within coordinates
Gm69529	predicted gene, 69529	365 bp upstream
Rcc2	regulator of chromosome condensation 2	1033 bp upstream
Rr377298	regulatory region 377298	within coordinates
Rr603517	regulatory region 603517	within coordinates
Rr603518	regulatory region 603518	543 bp proximal
Rr603519	regulatory region 603519	1044 bp proximal
Rr603520	regulatory region 603520	1752 bp proximal
Rr603521	regulatory region 603521	1902 bp proximal
Tssr39970	transcription start site region 39970	358 bp upstream
Tssr39971	transcription start site region 39971	427 bp upstream
Tssr39972	transcription start site region 39972	456 bp upstream
Tssr39973	transcription start site region 39973	478 bp upstream
Tssr39974	transcription start site region 39974	827 bp upstream
Tssr39975	transcription start site region 39975	963 bp upstream
Tssr39976	transcription start site region 39976	979 bp upstream
Tssr39977	transcription start site region 39977	1094 bp upstream
Tssr39978	transcription start site region 39978	1918 bp upstream
Tssr39979	transcription start site region 39979	1939 bp upstream
Tssr39980	transcription start site region 39980	1958 bp upstream
Tssr44270	transcription start site region 44270	135 bp downstream
Tssr44271	transcription start site region 44271	157 bp downstream
Tssr44272	transcription start site region 44272	291 bp downstream
Tssr44273	transcription start site region 44273	1561 bp downstream