rs32056258 SNP Detail

Summary

• ID
  rs32056258
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:94765383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCAGTAA CCTCATGGCT
  CACAACATCT GTAATGGGAT CCGATGCCCT CTTCTGGTCT GTCTGTAGAG AGTGACGGTA
  CACTCATGTA CATAAAGCAA ATAAATGAAT AAGTCTTAAA AGAAAAAGAA TCTAGAATGC
  ATTTGATGCA AGAGTCAGTA AACTAAATAA CTTAAAATAA AAACTAAGAG CTTCCATTGG
  Y
  GTCGTCCCTT CCACTCATTA AAGCCTAACA GGGAAGCATA GTATCTGAGA ACAGTAGTTT
  TGAATGAGCA CAGTTCTTCA TGAATTTTAG TCTTTAACGA TTGGACTACC AGAACTTCAT
  GATGGTCTCT TCTTGTATTC TATTATGCTG CTTGGTGGTC AGACATACAG AAGAGAGGAA
  AGACCAGGGT GCTATTTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47620391	NES11417898	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32056258					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47620391	NES11417898	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:94765383 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20835	CpG island 20835	822 bp distal
Nudt21	nudix hydrolase 21	1716 bp upstream
Ogfod1	2-oxoglutarate and iron-dependent oxygenase domain containing 1	within coordinates
Rr368582	regulatory region 368582	1404 bp downstream
Tssr78816	transcription start site region 78816	1467 bp downstream
Tssr82477	transcription start site region 82477	1728 bp upstream
Tssr82478	transcription start site region 82478	1709 bp upstream