rs32057167 SNP Detail

Summary

• ID
  rs32057167
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:94765664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAATTTTAG TCTTTAACGA
  TTGGACTACC AGAACTTCAT GATGGTCTCT TCTTGTATTC TATTATGCTG CTTGGTGGTC
  AGACATACAG AAGAGAGGAA AGACCAGGGT GCTATTTTCC TTCCAACAGA AGCTATTGCC
  TTGGACATGG ATCCTTTCCT TCACTGTGTG ATCCCAAACT TCATCCAAAG CCAAGACTTC
  Y
  TGGAAGGACT TCACAAAGAG CTTTTGAGCC TGGACTTCCA TGAAAAGTAC AATGATTTAT
  ATAAGTTCCA ACAGGTAATT TATTCTCATT GCATTCATTG GCTCTTCCTC CCCAGAAATC
  CCTTAGCTAT AAAATCATCC ACTAATCATG GCTACAGAGA TAGCTTAGTG GTTAAGAGCA
  CTTATCGCTC TTCCAGAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47620400	NES11417904	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32057167					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47620400	NES11417904	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:94765664 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20835	CpG island 20835	1103 bp distal
Nudt21	nudix hydrolase 21	1997 bp upstream
Ogfod1	2-oxoglutarate and iron-dependent oxygenase domain containing 1	within coordinates
Rr368582	regulatory region 368582	1685 bp downstream
Rr667879	regulatory region 667879	1735 bp distal
Rr667880	regulatory region 667880	420 bp distal
Tssr78816	transcription start site region 78816	1748 bp downstream
Tssr82478	transcription start site region 82478	1990 bp upstream