rs32058168 SNP Detail

Summary

• ID
  rs32058168
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24079203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGATG GGAAGGAGTA ATTCGTCTCC
  Y
  AAGATGGTAG GATAGGCTAT GCAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss47620938	NES10275876	PERLEGEN	MM_PANEL2	f	SNP		C	C		T		C	C
ss148072475	ENSMUSSNP2058194	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
ss321491968	CHEV_5_23380023	CHEVERUD	SCREENING_POP	f	SNP						T			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs32058168					SNP	T	C	C	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47620938	NES10275876	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24079203 () rs orientation: forward

Symbol	Name	Function Class
Gm9534	predicted gene 9534	within coordinates
Gm57318	predicted gene, 57318	within coordinates
Gm71416	predicted gene, 71416	489 bp upstream
Rr608201	regulatory region 608201	within coordinates
Rr608202	regulatory region 608202	500 bp proximal