ACAAC TATTTCAGAG GTACTCAGCA M AGGGAAGACA AGTCCTGCAA AGTCC M = A/C Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss45792811 | mCV24865560 | ABI | CRAMUS_MOUSE | f | SNP | C | A | ||||||||||||
ss47620950 | NES10275947 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | C | C | C | C | A | C | A | C | C | C | C | |
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
||||
rs32058900 | SNP | C | C | C | C | C | C | C | A | C | A | C | C | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss47620950 | NES10275947 | PERLEGEN | MM_PANEL | f | SNP | A/C |
Location: Chr5:24078234 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm9534 | predicted gene 9534 | within coordinates | ||||||
Gm57318 | predicted gene, 57318 | within coordinates | ||||||
Gm71416 | predicted gene, 71416 | 1458 bp upstream | ||||||
Rr608201 | regulatory region 608201 | 968 bp proximal | ||||||
Rr608202 | regulatory region 608202 | 1469 bp proximal | ||||||
Tssr50297 | transcription start site region 50297 | 1871 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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