rs32064250 SNP Detail

Summary

• ID
  rs32064250
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:10108742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTGGAGGG GGAAGATCGC GTGACTCTTT
  TAAGATAATT TGCGGTGTGT TAAGCCTCCG GGGTTTGTGG TTGGCGTTCC GCTTTTGTGT
  TTTCGCTACT GTTGCGAGGT GGCAAGCAAA AGTTACCGGT TGCTAAGATT AACTTTTTTA
  R
  GGACTTTATA GGGTAACATT TTATACAAGT GTTAGGAGCG GTGAATGCCT TAGGCGCTAC
  TTTTTAAAAA AGGTTTGTCT CAGTGCAGAT TTAATCTCCG CAACCTGTGC CTTCCAGCAG
  TTAATGTGAA ATTTGTTTCA GTCGTATTTT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45102519	mCV23215959	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss148572954	ENSMUSSNP738498	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
ss319632128	CHEV_1_10028598	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32064250					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:10108742 () rs orientation: forward

Symbol	Name	Function Class
Cops5	COP9 signalosome subunit 5	358 bp upstream
Cpgi31	CpG island 31	74 bp distal
Cpgi32	CpG island 32	1004 bp proximal
Cspp1	centrosome and spindle pole associated protein 1	within coordinates
Rr395966	regulatory region 395966	1481 bp upstream
Rr407692	regulatory region 407692	601 bp distal
Rr407693	regulatory region 407693	245 bp distal
Rr407694	regulatory region 407694	within coordinates
Rr407695	regulatory region 407695	766 bp proximal
Rr407696	regulatory region 407696	1159 bp proximal
Rr407697	regulatory region 407697	1279 bp proximal
Tssr4	transcription start site region 4	289 bp downstream
Tssr5924	transcription start site region 5924	1245 bp upstream
Tssr5925	transcription start site region 5925	1280 bp upstream
Tssr5926	transcription start site region 5926	1307 bp upstream
Tssr10955	transcription start site region 10955	623 bp upstream
Tssr10956	transcription start site region 10956	586 bp upstream
Tssr10957	transcription start site region 10957	549 bp upstream
Tssr10958	transcription start site region 10958	348 bp upstream
Tssr10959	transcription start site region 10959	1490 bp downstream