rs32064386 SNP Detail

Summary

• ID
  rs32064386
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:94877728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCATTCA ATCCCAAGCA
  CTGACATTAA AAAGCCAAAG GTGACAGTAT GCTTCTGTCA TTTCAGCCTT GAGGTACTGG
  AGACCGGAGG GCCCCTAAGG CTTGTTGGAC AGTAAGTCTT GCCTAATCAA GCAAGCTGTA
  TAAGCCCTGG AGGTCCAAGG CCTAAAGCAA AGAAGAAGTG TGAGGCCGGA GCACATGCAG
  R
  GCGAATGGAA ACAAACTCAA AGCCAGAGCT AGAGTCGCTG GGGCCTGAGA TCTGAATGAC
  TCAGCACTGT TAGAATGACT CGGCACCACC ATTAGAATGA GCCCCAGCTT CAAGCTCAAT
  GGCACAGGAG GGAGACTCCA TCTCCTCTCC TGGTCCTTCT CATCCTCTCC TCCTTTCTTC
  TTTTCTTCCT TGTTTTTTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47621558	NES11444635	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32064386					SNP	G	G	G	G	G	G	A	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47621558	NES11444635	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:94877728 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20837	CpG island 20837	1383 bp proximal
Mt3	metallothionein 3	1507 bp upstream
Rr667901	regulatory region 667901	within coordinates
Rr667902	regulatory region 667902	1153 bp proximal
Rr667903	regulatory region 667903	1620 bp proximal
Tssr78818	transcription start site region 78818	1635 bp upstream
Tssr78819	transcription start site region 78819	1892 bp upstream
Tssr78820	transcription start site region 78820	1922 bp upstream