rs32071579 SNP Detail

Summary

• ID
  rs32071579
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:178233007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAT CAACATACAA AATGTGTGTA
  W
  CCCTGAGAAC AGACCGTCAA TTTAT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45102951	mCV22364004	ABI	CRAMUS_MOUSE	f	SNP		A					T
ss51413008	NES14449896	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	T	T	A	T	A	T		T	A	A		A
ss146355576	ENSMUSSNP6369107	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss320159420	CHEV_1_180335573	CHEVERUD	SCREENING_POP	f	SNP										A				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32071579					SNP	T	A	T	T	T	A	T	A	T	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51413008	NES14449896	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:178233007 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1092	CpG island 1092	185 bp proximal
Efcab2	EF-hand calcium binding domain 2	643 bp upstream
Gm70920	predicted gene, 70920	468 bp downstream
Gm70923	predicted gene, 70923	1047 bp upstream
Rr29069	regulatory region 29069	within coordinates
Rr372517	regulatory region 372517	within coordinates
Tssr10392	transcription start site region 10392	575 bp upstream
Tssr10393	transcription start site region 10393	589 bp upstream
Tssr10394	transcription start site region 10394	596 bp upstream
Tssr10395	transcription start site region 10395	610 bp upstream
Tssr10396	transcription start site region 10396	630 bp upstream
Tssr10397	transcription start site region 10397	1053 bp upstream
Tssr15493	transcription start site region 15493	973 bp downstream