rs32071922 SNP Detail

Summary

• ID
  rs32071922
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:48952661 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGGGTATA TTCCTACCCC
  TGAGCTGCAG AGACCTGTGT AACTTCCACT CCAGGCCACG TACTGTGGCA AAGCACTAAG
  TGCAGAACAG AAACTGTAGG AGAACAAGCT AGTGAGGGTT GGGACTTAGC TGTTAGCAGA
  GTTAGCAATG AGCCTAGGAG TGAAGAAATG ACACTGGTGG GATAGAGAAG AGTGGGCGGT
  R
  GCGGAGTTGC TACATTTCCA AAGTCAAAAG GCCTTCTGAG AAGGTGACCT CAGAGATGAG
  AACACAGGTG AATCTAGAGG AACAATGTTC CAAGGAGGGA CTGTCAGATG TGAGGCGGGA
  AGGACTTTAA TATATTAACA GCAGAACAAA GGCTACTACT GGTAGAGCCT GGAAGGTCAG
  GGGTGGAAGG TAGAAGAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46101439	mCV23859142	ABI	CRAMUS_MOUSE	f	SNP	A	G	A					A		A
ss61005716	NES16117544	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		A	A	A	A	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32071922					SNP	A	G	A	A	A	A	A	A	A	A	A	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61005716	NES16117544	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48952661 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19143	CpG island 19143	1271 bp proximal
Nav2	neuron navigator 2	within coordinates
Rr161370	regulatory region 161370	1661 bp distal
Rr167850	regulatory region 167850	739 bp proximal
Tssr66792	transcription start site region 66792	908 bp upstream
Tssr66793	transcription start site region 66793	1167 bp upstream
Tssr66794	transcription start site region 66794	1338 bp upstream
Tssr66795	transcription start site region 66795	1368 bp upstream