rs32072579 SNP Detail

Summary

• ID
  rs32072579
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:170415598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTT TACTCAGCAA TCCAGCTCTG
  Y
  ATTCCGAGGG AGAGTTTGAC ATCAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45103161	mCV23245222	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss146138562	ENSMUSSNP3859551	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320111471	CHEV_1_172518160	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs32072579					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170415598 () rs orientation: forward

Symbol	Name	Function Class
Cpgi994	CpG island 994	982 bp proximal
Nos1ap	nitric oxide synthase 1 (neuronal) adaptor protein	Intron
Rr423086	regulatory region 423086	172 bp proximal
Rr423087	regulatory region 423087	1822 bp proximal
Tssr14920	transcription start site region 14920	1722 bp downstream
Tssr14921	transcription start site region 14921	1762 bp downstream