rs32073566 SNP Detail

Summary

• ID
  rs32073566
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126933071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTCG GAGAAACTGC CATCTCAGGA
  Y
  CCAGTAATAC CCCAGCCTTC CCAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46101640	mCV23676595	ABI	CRAMUS_MOUSE	f	SNP		C	T				C
ss47262259	NES11569979	PERLEGEN	MM_PANEL2	f	SNP	C			T	C	C		C	C	C	C		C	T	T		C
ss145879540	ENSMUSSNP466784	ENSEMBL	ENSEMBL_Sanger	f	SNP			T
ss322451441	CHEV_7_134477413	CHEVERUD	SCREENING_POP	f	SNP												T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs32073566					SNP	C	C	T	T	C	C	C	C	C	C	C	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47262259	NES11569979	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126933071 () rs orientation: forward

Symbol	Name	Function Class
Itgal	integrin alpha L	within coordinates
Tssr69200	transcription start site region 69200	1537 bp downstream
Tssr69201	transcription start site region 69201	318 bp downstream
Tssr69202	transcription start site region 69202	274 bp downstream
Tssr69203	transcription start site region 69203	232 bp downstream
Tssr69204	transcription start site region 69204	64 bp downstream
Tssr69205	transcription start site region 69205	814 bp upstream
Tssr74988	transcription start site region 74988	1222 bp downstream