rs32075670 SNP Detail

Summary

• ID
  rs32075670
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126188521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGGGCTG GGAGCTAGTG
  AAGCCCTGCC TGGTCTAAGG CAAACGAGCT AGAGCCTGTC CTGTGATTGG CCAGACTCCA
  GCCTTAGAGT CTTAACGGGC GAGGGAGGGA GCTGGAAGGT CACTCCATAG GGCTTGAAGC
  TAGGTGTTAG GAATCCCAGG CTGAGCCTGG GCGCCTGGGC AGGGACAGCA GCAGCAGGTC
  Y
  CGAACAGCCC GAGACAGGAC AAGCTCCAGG GAGTGAAGGA GCTGGTAGGT ATAGAGCAGC
  TGGGGCCAGG ACACTTGGGA TGACACCTGA TTGGGGCCAC CCAGAGCCCC TAGGGGCAGC
  TTCTTTTCTT CTTCTTCCTC CTCTTCCTCT TCCTCCTTGT CCTCCTCCTC CTTTGAACAT
  TTGAATCCTG CAGCCAGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46102149	mCV22750541	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					C		C
ss47255427	NES11556923	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C		C	C	C	C	C	C	C	C	C
ss145874715	ENSMUSSNP6289982	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32075670					SNP	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47255427	NES11556923	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126188521 () rs orientation: forward

Symbol	Name	Function Class
Apobr	apolipoprotein B receptor	237 bp downstream
Il27	interleukin 27	within coordinates
Tssr69041	transcription start site region 69041	46 bp upstream
Tssr74769	transcription start site region 74769	1812 bp upstream
Tssr74770	transcription start site region 74770	1778 bp upstream
Tssr74771	transcription start site region 74771	173 bp upstream
Tssr74772	transcription start site region 74772	100 bp upstream
Tssr74773	transcription start site region 74773	76 bp upstream
Tssr74774	transcription start site region 74774	45 bp upstream
Tssr74775	transcription start site region 74775	52 bp downstream
Tssr74776	transcription start site region 74776	59 bp downstream
Tssr74777	transcription start site region 74777	98 bp downstream
Tssr74778	transcription start site region 74778	471 bp downstream
Tssr74779	transcription start site region 74779	707 bp downstream
Tssr74780	transcription start site region 74780	904 bp downstream