rs32078817 SNP Detail

Summary

• ID
  rs32078817
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:23792816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATGG GAGGATAAAT CTGGAATCAG
  K
  TTACATAACC ACAGAGCAGG AGTAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss47623098	NES10287955	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	T	G			G	G
ss148061227	ENSMUSSNP1155475	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					T
ss321489827	CHEV_5_23093636	CHEVERUD	SCREENING_POP	f	SNP								T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs32078817					SNP	T	T	G	G	T	G	T	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47623098	NES10287955	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:23792816 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Srpk2	serine/arginine-rich protein specific kinase 2			Intron
				Noncoding-Transcript-Variant
Tssr1438	transcription start site region 1438			986 bp downstream
Tssr50280	transcription start site region 50280			1191 bp upstream