rs32078820 SNP Detail

Summary

• ID
  rs32078820
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:23792616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAT CTGGTCCCAG CAAGTAAGAG
  R
  AGCTCAGAGC AATAAACAAC CATGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss47623101	NES10287951	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A	G			G	G
ss148061207	ENSMUSSNP6995701	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					A
ss321489825	CHEV_5_23093436	CHEVERUD	SCREENING_POP	f	SNP								A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs32078820					SNP	A	A	G	G	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47623101	NES10287951	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:23792616 () rs orientation: forward

Symbol	Name	Function Class
Rr117577	regulatory region 117577	416 bp distal
Rr117578	regulatory region 117578	785 bp proximal
Srpk2	serine/arginine-rich protein specific kinase 2	within coordinates
Tssr1438	transcription start site region 1438	786 bp downstream
Tssr50280	transcription start site region 50280	991 bp upstream