rs32078823 SNP Detail

Summary

• ID
  rs32078823
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:23792392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGATG GACCTGGAGA TACATATGAC
  R
  ACAATCTGTT TTTAACTTTG GGATT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss47623104	NES10287948	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	A		A	A
ss148061203	ENSMUSSNP1072877	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss321489824	CHEV_5_23093212	CHEVERUD	SCREENING_POP	f	SNP							G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs32078823					SNP	G	G	A	A	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47623104	NES10287948	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:23792392 () rs orientation: forward

Symbol	Name	Function Class
Rr117577	regulatory region 117577	192 bp distal
Rr117578	regulatory region 117578	1009 bp proximal
Srpk2	serine/arginine-rich protein specific kinase 2	within coordinates
Tssr1438	transcription start site region 1438	562 bp downstream
Tssr50280	transcription start site region 50280	767 bp upstream