rs32079338 SNP Detail

Summary

• ID
  rs32079338
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171976051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTTCCCCGC AGGACAGGCC CGATCCCTTT CCTAAAACTC
  CCGGACTTTA AGTCTTACTC CCCTCCTCCG AGTCGGTGCT GGGAGGACTC GTCCTCTGCC
  Y
  GGGTCGGTCC ACGGGGTTGC CCCCTAGGGC CAACCCCATG ACTCACAGGG GCTTCTCGTT
  CGTCCGGTGA CCCATTCGTA AACTCTCATT TCTCCCTTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45103835	mCV23114266	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss120006867	PARCsnp_1.17511	PARC_SEQ	INBRED	f	SNP		C	T
ss120009740	PARCsnp_1.07137	PARC_SEQ	INBRED	f	SNP		C	T
ss146182863	ENSMUSSNP673781	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss320122956	CHEV_1_174078615	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32079338					SNP	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171976051 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1037	CpG island 1037			within coordinates
Dcaf8	DDB1 and CUL4 associated factor 8			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Gm70088	predicted gene, 70088			497 bp upstream
Rr372457	regulatory region 372457			within coordinates
Rr423469	regulatory region 423469			508 bp distal
Rr423470	regulatory region 423470			296 bp distal
Rr423471	regulatory region 423471			within coordinates
Rr423472	regulatory region 423472			1482 bp proximal
Tssr10170	transcription start site region 10170			436 bp downstream
Tssr10171	transcription start site region 10171			390 bp downstream
Tssr10172	transcription start site region 10172			381 bp downstream
Tssr10173	transcription start site region 10173			308 bp downstream
Tssr15148	transcription start site region 15148			519 bp upstream