rs32079652 SNP Detail

Summary

• ID
  rs32079652
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:23790926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTC CACCAGCCAA CCCACACCTC
  R
  GAGCTGCAGC TGCTGCCACT GCCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	LG/J	MOLF/EiJ	SM/J
ss47623113	NES10287998	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G		A
ss321489809	CHEV_5_23091746	CHEVERUD	SCREENING_POP	f	SNP						G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	LG/J	MOLF/EiJ	SM/J
rs32079652					SNP	A	A	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47623113	NES10287998	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:23790926 () rs orientation: forward

Symbol	Name	Function Class
Rr117577	regulatory region 117577	875 bp proximal
Srpk2	serine/arginine-rich protein specific kinase 2	within coordinates
Tssr1438	transcription start site region 1438	866 bp upstream
Tssr50280	transcription start site region 50280	692 bp downstream