rs32080746 SNP Detail

Summary

• ID
  rs32080746
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180770065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCGTGAG GACGGCCACG
  CGTGGACCAG CGTTAGAGAA CCACATTGGG GTTCACTGCC CGGCGCACAG AGCTCGAGGT
  CCTGCTGGGG CCGGCGCGAG CGAAGAGTCC AAATTAGGTA ACGCGTGGAC ACAGTTCTGC
  GCATGTGCAA GAGGAGCCGG AGTTTCACTT TGTAACTTTT AAGTGGTGCG GACGCCACCC
  M
  GCCTCGCCAG GTACGGACTG ACCACTCCCC CGGGCGCGCG CGCCGCGCCG CCGCCGCAGG
  TAAAGTGGGA AGGGGAGCAG AGATGGGGAG GTTGCGGCCA GCCCCTCCCA GGACGCGCCG
  GCCCGGGTCC TCGCGGGGCG GGGCGCCTCG GGTCGCTTTC CCCGGGGACT GTCTGGTGAC
  AGTAGCGGGG TAGGTGGCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45104214	mCV25327847	ABI	CRAMUS_MOUSE	f	SNP	C	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs32080746					SNP	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180770065 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1127	CpG island 1127	within coordinates
Cpgi1128	CpG island 1128	881 bp proximal
Rr424644	regulatory region 424644	1449 bp distal
Rr424645	regulatory region 424645	1096 bp distal
Rr424646	regulatory region 424646	31 bp distal
Rr424647	regulatory region 424647	within coordinates
Rr424648	regulatory region 424648	1379 bp proximal
Rr424649	regulatory region 424649	1512 bp proximal
Rr424650	regulatory region 424650	1546 bp proximal
Tmem63a	transmembrane protein 63a	within coordinates
Tssr324	transcription start site region 324	1557 bp upstream
Tssr10503	transcription start site region 10503	148 bp downstream
Tssr10504	transcription start site region 10504	132 bp downstream
Tssr10505	transcription start site region 10505	55 bp downstream
Tssr10506	transcription start site region 10506	23 bp downstream
Tssr10507	transcription start site region 10507	within coordinates