rs32082889 SNP Detail

Summary

• ID
  rs32082889
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18911263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGA GGAGTGGAGA GGTAAAGAGA
  Y
  GCGGAGAGTG GACACTGGTC TCTAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss46103058	mCV25048386	ABI	CRAMUS_MOUSE	f	SNP	T	C						C
ss60972636	NES16155332	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	T	T	T	C	T	C	T	T	C
ss148469595	ENSMUSSNP4441656	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C						C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs32082889					SNP	T	C	C	C	T	T	T	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60972636	NES16155332	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18911263 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18450	CpG island 18450	528 bp distal
Cpgi18451	CpG island 18451	787 bp proximal
Cpgi18452	CpG island 18452	1619 bp proximal
Eml2	echinoderm microtubule associated protein like 2	within coordinates
Gm71808	predicted gene, 71808	727 bp upstream
Rr155272	regulatory region 155272	938 bp proximal
Rr167138	regulatory region 167138	within coordinates
Tssr64790	transcription start site region 64790	898 bp downstream
Tssr64791	transcription start site region 64791	864 bp downstream
Tssr64792	transcription start site region 64792	826 bp downstream
Tssr64793	transcription start site region 64793	801 bp downstream
Tssr64794	transcription start site region 64794	645 bp downstream
Tssr64795	transcription start site region 64795	865 bp upstream
Tssr64796	transcription start site region 64796	1643 bp upstream