rs32084847 SNP Detail

Summary

• ID
  rs32084847
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:23621931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTACAAAA TATATTTTAT
  TATTCTCCAC TGTCACACAT TTTCACTGAA CATTTAAGGT CACAAATAGA CAGGCAAGGT
  GATCCAGCAC CCTGACAGCT GCAGGGCACT AACACCTTAG TAAGTGCACA CAAATACATA
  CTGAGGTTTT TTTTTTTTAA AGCAAAATTA GGATTATCTT GTAAATATCA CTTCAAGGCC
  W
  ACGATAGCCA TCTTTCCACA TCAGCATTTT TAAATGATTG TCCGTGCAGC GTTGCCAGGC
  GAGTAGTACT GAGCCACAAC TCTCCTCGCC TGTTTCATTT TGGTTTGTAT TTTTACTGTT
  AACATAGCTT ACATAAATAG TACATCTTAA GTCTGTACTA GATTGACCTT TCTATTATTT
  GCAAGTATAC TCTACTGTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47624427	NES10278284	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs32084847					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47624427	NES10278284	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:23621931 () rs orientation: forward

Symbol	Name	Function Class
5031425E22Rik	RIKEN cDNA 5031425E22 gene	within coordinates
Cpgi15579	CpG island 15579	1317 bp proximal
Gm57286	predicted gene, 57286	within coordinates
Gm72704	predicted gene, 72704	1366 bp upstream
Rr377698	regulatory region 377698	1707 bp downstream
Rr608093	regulatory region 608093	1531 bp distal
Rr608094	regulatory region 608094	399 bp distal
Rr608095	regulatory region 608095	966 bp distal
Rr608096	regulatory region 608096	876 bp proximal
Rr608097	regulatory region 608097	1369 bp proximal
Rr608098	regulatory region 608098	1377 bp proximal
Rr608099	regulatory region 608099	1592 bp proximal
Tssr45362	transcription start site region 45362	1676 bp upstream
Tssr50265	transcription start site region 50265	1581 bp downstream