rs32084850 SNP Detail

Summary

• ID
  rs32084850
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:23621359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGT GGCACTGGGA ATGAATGCAC
  R
  CAGTTTCAGC TCACACCTCG GTCTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	PWD/PhJ	SM/J	WSB/EiJ
ss45806355	mCV23736125	ABI	CRAMUS_MOUSE	f	SNP	G	A				A		G
ss47624430	NES10278283	PERLEGEN	MM_PANEL2	f	SNP		A	A	G	A		G	G		G		G
ss148057236	ENSMUSSNP578780	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss321488917	CHEV_5_22922179	CHEVERUD	SCREENING_POP	f	SNP									G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	PWD/PhJ	SM/J	WSB/EiJ
rs32084850					SNP	G	A	A	G	A	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47624430	NES10278283	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:23621359 () rs orientation: forward

Symbol	Name	Function Class
5031425E22Rik	RIKEN cDNA 5031425E22 gene	within coordinates
Cpgi15579	CpG island 15579	1889 bp proximal
Gm57286	predicted gene, 57286	168 bp downstream
Gm72704	predicted gene, 72704	1938 bp upstream
Rr377698	regulatory region 377698	1135 bp downstream
Rr608093	regulatory region 608093	959 bp distal
Rr608094	regulatory region 608094	within coordinates
Rr608095	regulatory region 608095	394 bp distal
Rr608096	regulatory region 608096	1448 bp proximal
Rr608097	regulatory region 608097	1941 bp proximal
Rr608098	regulatory region 608098	1949 bp proximal