rs32084853 SNP Detail

Summary

• ID
  rs32084853
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:23621288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGT GCAAGTAACT TAGGTGGGAA
  Y
  AACTAGATTA TCCAGTTAAG TTCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45737400	mCV23736126	ABI	CRAMUS_MOUSE	f	SNP	T	C				C	T
ss47624433	NES10278282	PERLEGEN	MM_PANEL2	f	SNP		C	T	T	C		T	T	T		T	C		T
ss148057231	ENSMUSSNP4836177	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C					T
ss321488916	CHEV_5_22922108	CHEVERUD	SCREENING_POP	f	SNP										T			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs32084853					SNP	T	C	T	T	C	C	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47624433	NES10278282	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:23621288 () rs orientation: forward

Symbol	Name	Function Class
5031425E22Rik	RIKEN cDNA 5031425E22 gene	within coordinates
Cpgi15579	CpG island 15579	1960 bp proximal
Gm57286	predicted gene, 57286	239 bp downstream
Rr377698	regulatory region 377698	1064 bp downstream
Rr608093	regulatory region 608093	888 bp distal
Rr608094	regulatory region 608094	within coordinates
Rr608095	regulatory region 608095	323 bp distal
Rr608096	regulatory region 608096	1519 bp proximal