rs32085676 SNP Detail

Summary

• ID
  rs32085676
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:23621184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTTGCAA ATGTCAAGTC
  TCACACTGGT ACAAGATATA TAATCAGCTA TGGCTTCAAG CCAAAAAGGC TCTCCTCAGA
  AGAAGCATGA TGCATTTTAT GATAAGGTGT TGTGTACCCT TGTCCCTCCA ACTAAGGAAG
  AGAAGAACAA CAAAAGACCT CAAGCCCCCC AAAGCTTGAA GCTGTATGTC GAGCAATTAA
  K
  AATCTGTTTC TACTTGATAC TGACTGCTGT ACAAGGTGCC TTTCACTTAG GCGTTTTCTT
  TGCTGCATAG TGACAGAGAA AGTGCAAGTA ACTTAGGTGG GAACAACTAG ATTATCCAGT
  TAAGTTCACA CCACAGTCTC TGTATTCAGG GTGTGGCACT GGGAATGAAT GCACACAGTT
  TCAGCTCACA CCTCGGTCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47624436	NES10278281	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs32085676					SNP	T	T	T	T	T	T	T	T	T	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47624436	NES10278281	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:23621184 () rs orientation: forward

Symbol	Name	Function Class
5031425E22Rik	RIKEN cDNA 5031425E22 gene	within coordinates
Gm57286	predicted gene, 57286	343 bp downstream
Rr377698	regulatory region 377698	960 bp downstream
Rr608093	regulatory region 608093	784 bp distal
Rr608094	regulatory region 608094	within coordinates
Rr608095	regulatory region 608095	219 bp distal
Rr608096	regulatory region 608096	1623 bp proximal