rs32086766 SNP Detail

Summary

• ID
  rs32086766
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:157335282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GCCTGGTGCC TGCCAACTGT GACAAATGAG GACTTGGCAC AGAGTGGTGA GCAAGCGGTG
  GCTGTGTGGC TTCTGTTCCC AAGGTTTATA TCCTGAAGTT GGGTCCAGAG TTCCTGCTAT
  TTGCCGAGTT CATAAACCAT GTGTTTACAG GTTGGTGATT TTCCTTCCTT TTCTTCCTTT
  CTTTTTCTTT CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT
  TTCTTCCTTC CTTCCTTCCT TCCTTCCTTC CTTCCTTCTT CCTTCCTCCC TCCCTCCCTC
  Y
  CTCCCTCCCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTTTCTCTCT TTCTTTCTTT
  GGAGACTTTT TTTTTCTGCT CACCAGCTTT GCAGGAAACC TCAAAAGGGA CCACCTGTTG
  CCTACCTGGA GTGCAGTTAA TGTTTTGGCC AACAGATATT TTTAACTCCC ACCTCTCTGC
  TGGGAAAACC TAGGCAAACA AAGTGGAAGA AGTGATGGCC CCTGTGGAAT TTGCAGCTCA
  GTAGGAAAAA CAGATGTTAC GTACGAGGGG AGGAGTGACC GCTGGGCTGG GAGAAGAGAG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45104910	mCV23079331	ABI	CRAMUS_MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs32086766					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:157335282 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm15486	predicted gene 15486			within coordinates
Rr421396	regulatory region 421396			1447 bp distal
Rr421397	regulatory region 421397			892 bp distal
Rr421398	regulatory region 421398			172 bp distal
Rr421399	regulatory region 421399			216 bp proximal
Sec16b	SEC16 homolog B, endoplasmic reticulum export factor			Intron
				Noncoding-Transcript-Variant
Tssr9592	transcription start site region 9592			936 bp downstream
Tssr9593	transcription start site region 9593			901 bp downstream