rs32088245 SNP Detail

Summary

• ID
  rs32088245
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:111831632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAAGATGG GGAGGGAGCC
  TGCAAATTAG GGTTGACAGC CAGAGGAGGC AGAGTTTAAT CAGATGTCCG AGGTAATGGG
  CTATCAGGCA GAGAGTAAAA GGTGTGTGCA AAGATCCTGA GGCAGGCCAC GGCCCCTGGA
  AGGCGACCAA CGGTAATCTT CAGTTCTGCA GCCCTCTCGA AAACCAGATC CTGTTTCTCT
  Y
  CCGGGTGTTA AGCCTCTGAG AAAATCACCA GGAAGGTTTT AAAGCAAAAC AAAAGCCTTT
  TCTGGGCTGT CCCCAGGACC ATCTCTGGGT ACTTAGAGTC AGCTTGCTCA GTCTTTATGT
  CAACGGCCGA ACTTGGGTGT CCTTCACACC CCACCCTGTG GTGCAGCTAC CTGGGAGCTA
  CTGAGATGCA CTAAAGTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46639792	NES10390329	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32088245					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46639792	NES10390329	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:111831632 () rs orientation: forward

Symbol	Name	Function Class
Gm71303	predicted gene, 71303	373 bp upstream
Gm71305	predicted gene, 71305	within coordinates
Rr617176	regulatory region 617176	1743 bp distal
Rr617177	regulatory region 617177	573 bp distal
Rr617178	regulatory region 617178	653 bp distal