rs32088246 SNP Detail

Summary

• ID
  rs32088246
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:111831701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGTAATGG GCTATCAGGC
  AGAGAGTAAA AGGTGTGTGC AAAGATCCTG AGGCAGGCCA CGGCCCCTGG AAGGCGACCA
  ACGGTAATCT TCAGTTCTGC AGCCCTCTCG AAAACCAGAT CCTGTTTCTC TCCCGGGTGT
  TAAGCCTCTG AGAAAATCAC CAGGAAGGTT TTAAAGCAAA ACAAAAGCCT TTTCTGGGCT
  S
  TCCCCAGGAC CATCTCTGGG TACTTAGAGT CAGCTTGCTC AGTCTTTATG TCAACGGCCG
  AACTTGGGTG TCCTTCACAC CCCACCCTGT GGTGCAGCTA CCTGGGAGCT ACTGAGATGC
  ACTAAAGTGA GCCCCTCAAA GTGGCCCTAG TGGGACCCCT CTCCTGGCCC CTGCAAGTCT
  AGTCCACCTC CCCGTAGGAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46639793	NES10390330	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32088246					SNP	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46639793	NES10390330	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:111831701 () rs orientation: forward

Symbol	Name	Function Class
Gm71303	predicted gene, 71303	304 bp upstream
Gm71305	predicted gene, 71305	within coordinates
Rr617176	regulatory region 617176	1812 bp distal
Rr617177	regulatory region 617177	642 bp distal
Rr617178	regulatory region 617178	722 bp distal