rs32088249 SNP Detail

Summary

• ID
  rs32088249
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:111831930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGCTTGC TCAGTCTTTA
  TGTCAACGGC CGAACTTGGG TGTCCTTCAC ACCCCACCCT GTGGTGCAGC TACCTGGGAG
  CTACTGAGAT GCACTAAAGT GAGCCCCTCA AAGTGGCCCT AGTGGGACCC CTCTCCTGGC
  CCCTGCAAGT CTAGTCCACC TCCCCGTAGG ATCTGAGACA CGGACTCAGA TTGGATTGGT
  Y
  GTGTCTGTGC CTTGTGAGAT CGATCAAACC AATGGATTGG TCGTGCCTAG CCTGGAAACA
  GCCAGAGGCT CTAAGAACCC ACTGGATTAA ATCTGCCGCT ACCTGAATGT CTTCATTTCA
  CCCCTTTAAG ACCAACCATC TAAATGCTGT TACACATAGG TTAAGCCCAT AAGAGATGGT
  GTCCTTGCCT TGGAGGAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46639796	NES10390333	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32088249					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46639796	NES10390333	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:111831930 () rs orientation: forward

Symbol	Name	Function Class
Gm71303	predicted gene, 71303	75 bp upstream
Gm71305	predicted gene, 71305	within coordinates
Rr617177	regulatory region 617177	871 bp distal
Rr617178	regulatory region 617178	951 bp distal