rs32088253 SNP Detail

Summary

• ID
  rs32088253
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:111832324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAGAGGG AGCCTGTGAG
  AACCGCTCAG ATCCTCGGTG GCAGAAGGCT GCCTATAGGT TGCTCCAGCC TTAACAGCTT
  CAGAGTGGGT AACACGAATT AGTTCTAAAC GTTCAGGGTG GTCTTTAACG AGGACTCCTT
  AGGGGATTCA TTTTGCTTTT GACCTGTGGT TTCCTTGTTT CTGTGAGACC CGGCAAGAAG
  R
  CTCCAAGATC GGAAGAGAGC AGAAAGCTTC TGGAAGCTTG TTTGCCCACA TGTCTGTTAG
  TAGGTGCAGT TGGAGCTATT GAGGGTTACA GTAACACGTA TGCGACTTTC CATGTGATCT
  GGGCTTCATC ATTAGGGTTT ATCGAAACCC TAAGGTGCCT GTCCCGGGCA GTATGACCTT
  ACTGTAGACG TTCCTGCAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46639800	NES10390337	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32088253					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46639800	NES10390337	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:111832324 () rs orientation: forward

Symbol	Name	Function Class
Gm71303	predicted gene, 71303	within coordinates
Gm71305	predicted gene, 71305	within coordinates
Rr617177	regulatory region 617177	1265 bp distal
Rr617178	regulatory region 617178	1345 bp distal