rs32088688 SNP Detail

Summary

• ID
  rs32088688
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18910955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTTCTTC CAAGTCCTTA
  TCTCCTCCCT TGTGAGAGAT TCTCCCTTTC TCCTCATCAA CAGGATTCTG ACCCCAAAAC
  AAGGTCCTTT ATCCCCAAAG TCACGATCCT GCTCCCCCTA TCCCAACAAA CACCTGCTCC
  GAAGGTGTCC AGACAGAGGG AAGGGTAAAG ATCGTAGAGG AGCCTGTGAG GGAGAGGGCA
  R
  ACCTGGGGTT GGGGTAGGGA GTCAGCTCGA TGTGGAACTC TTTCTGCCCC CTACCTCCTC
  AGCCCCTTCC CCGGGACCCT TCCCTGTCTT TGGGCATAGC AGGGGGAAAT GCTGAATTGA
  GGGCTGGGCT TGGGAATAGT AAAACAGCAG AAGACTTTCT GTACACTGCA CTGTCTTCAG
  CTTTGCCTCT GCCCCCTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46103432	mCV25048378	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss148469576	ENSMUSSNP6965106	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32088688					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18910955 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18450	CpG island 18450	220 bp distal
Cpgi18451	CpG island 18451	1095 bp proximal
Cpgi18452	CpG island 18452	1927 bp proximal
Eml2	echinoderm microtubule associated protein like 2	within coordinates
Gm71808	predicted gene, 71808	419 bp upstream
Rr155272	regulatory region 155272	1246 bp proximal
Rr167138	regulatory region 167138	within coordinates
Tssr64790	transcription start site region 64790	590 bp downstream
Tssr64791	transcription start site region 64791	556 bp downstream
Tssr64792	transcription start site region 64792	518 bp downstream
Tssr64793	transcription start site region 64793	493 bp downstream
Tssr64794	transcription start site region 64794	337 bp downstream
Tssr64795	transcription start site region 64795	1173 bp upstream
Tssr64796	transcription start site region 64796	1951 bp upstream