rs32089045 SNP Detail

Summary

• ID
  rs32089045
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153363629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTT TGTAGAGCAA GCTAGCCCAC
  M
  ACTTAACGCA GTCCACTTGC CTCCA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45105397	mCV25366594	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	A
ss145743764	ENSMUSSNP1889782	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32089045					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153363629 () rs orientation: forward

Symbol	Name	Function Class
Cpgi867	CpG island 867	within coordinates
Dhx9	DExH-box helicase 9	223 bp upstream
Rr396394	regulatory region 396394	62 bp downstream
Rr396395	regulatory region 396395	1215 bp upstream
Rr420682	regulatory region 420682	286 bp distal
Rr420683	regulatory region 420683	1630 bp distal
Rr420684	regulatory region 420684	348 bp distal
Rr420685	regulatory region 420685	within coordinates
Rr420686	regulatory region 420686	1037 bp proximal
Tssr9459	transcription start site region 9459	962 bp downstream
Tssr9460	transcription start site region 9460	60 bp downstream
Tssr14270	transcription start site region 14270	221 bp upstream
Tssr14271	transcription start site region 14271	202 bp upstream
Tssr14272	transcription start site region 14272	193 bp upstream