rs32089158 SNP Detail

Summary

• ID
  rs32089158
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:111833395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGAAATA CAACCTGGAC
  CCTCTGGAAG AGCAACAAGC GCTCTTAACT GCTAAGCCAT CTCTCCAGCC ACAAGAAAGG
  TTTTTTTTTT TTTTAATTTT TAAAAATTAA TTCTTCTATA CACATATCAG GAACTGCTGG
  ACCATAGAAA TCCTGTGTTT AGTTTGTGAA CAATTTCCAG AGCCTCGCTG TTGAACTGTG
  Y
  GGAACCTAAT GATGCATTTA AAGGCATCAC ATTTGTGTCT TGAAAAGTTC TGTGTGGCTC
  TTGCCCTACC CTGCTCATTT CTGTCTGAGT ATAGACATTC ATGGCCTAGA ATCACATACT
  CCCTGATCCA AATAGAAATG CTGAAGACGT ACAGGGAGAG GTCAGTGCAG TAGTGGTCAG
  GTCTGTGAAA CTAGGAACTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46639805	NES10390305	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32089158					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46639805	NES10390305	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:111833395 () rs orientation: forward

Symbol	Name	Function Class
Gm71303	predicted gene, 71303	within coordinates
Gm71305	predicted gene, 71305	862 bp upstream