rs32089289 SNP Detail

Summary

• ID
  rs32089289
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:181667472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTG AAGGAAAAAA AAACAAAAAA
  M
  AAAAAAAGAC TTCCCAAGCT CCATC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45104767	mCV23624420	ABI	CRAMUS_MOUSE	f	SNP	C	A	C	C
ss146399274	ENSMUSSNP5587698	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32089289					SNP	C	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181667472 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1138	CpG island 1138	1585 bp proximal
Gm55354	predicted gene, 55354	546 bp downstream
Lbr	lamin B receptor	within coordinates
Rr424801	regulatory region 424801	36 bp proximal
Rr424802	regulatory region 424802	542 bp proximal
Rr424803	regulatory region 424803	1127 bp proximal
Tssr15587	transcription start site region 15587	1861 bp upstream
Tssr15588	transcription start site region 15588	1106 bp downstream